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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-06-15 13:02:52, GGGenome : Rabbit pre-spliced RNA, RefSeq on mOryCun1.1, D3G 26.03 (Mar, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

XR_011387597.1|LOC138849175;138849175|chr3:99935538:100219137:+|prespliced::chr3:99935538-100219137(+)
position: 89543-89557
GCTTCAGGTGCTTCATTTCAATCTATTTTT89543TTCATTGACAACATTTATTAGATTTGCATGTGATTTTTGTTGAAT
XM_070048642.1|PCCA;100357836|chr9:12180948:12619667:-|prespliced::chr9:12180948-12619667(-)
position: 25514-25528
TCATTAGCATAATAGGTATCAGAAAAGGTT25514TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_008260152.4|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850465.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850466.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850468.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850469.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850470.2|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_070048637.1|PCCA;100357836|chr9:12180948:12619818:-|prespliced::chr9:12180948-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850471.2|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_051850473.2|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_070048638.1|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_070048640.1|PCCA;100357836|chr9:12249025:12619818:-|prespliced::chr9:12249025-12619818(-)
position: 25665-25679
TCATTAGCATAATAGGTATCAGAAAAGGTT25665TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
XM_002713403.5|HESX1;100008708|chr10:92700426:92703268:+|prespliced::chr10:92700426-92703268(+)
position: 88-102
AGAATGCTACACTCCAAATACTATTGTGTT88TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC
XM_008257472.4|C1H9orf153;100342003|chr1:144313954:144355398:+|prespliced::chr1:144313954-144355398(+)
position: 40676-40690
AGAAACACATTGGGAATCTTGGAAGTGGAA40676AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_008257487.4|C1H9orf153;100342003|chr1:144325237:144355398:+|prespliced::chr1:144325237-144355398(+)
position: 29393-29407
AGAAACACATTGGGAATCTTGGAAGTGGAA29393AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847112.2|C1H9orf153;100342003|chr1:144325237:144355398:+|prespliced::chr1:144325237-144355398(+)
position: 29393-29407
AGAAACACATTGGGAATCTTGGAAGTGGAA29393AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_008257491.4|C1H9orf153;100342003|chr1:144328257:144355398:+|prespliced::chr1:144328257-144355398(+)
position: 26373-26387
AGAAACACATTGGGAATCTTGGAAGTGGAA26373AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847101.2|C1H9orf153;100342003|chr1:144328257:144355398:+|prespliced::chr1:144328257-144355398(+)
position: 26373-26387
AGAAACACATTGGGAATCTTGGAAGTGGAA26373AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847092.2|C1H9orf153;100342003|chr1:144348787:144355398:+|prespliced::chr1:144348787-144355398(+)
position: 5843-5857
AGAAACACATTGGGAATCTTGGAAGTGGAA5843AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XR_011381533.1|LOC103350916;103350916|chr13:59575282:59809668:-|prespliced::chr13:59575282-59809668(-)
position: 182097-182111
GGGTATAGTGCTCAGTGGTTCAGGAGAACT182097AATGTTGTCAATGAATCCTCCTGATCCTGGAGGTGAGATAGTTGC
XR_011381534.1|LOC103350916;103350916|chr13:59575282:59809672:-|prespliced::chr13:59575282-59809672(-)
position: 182101-182115
GGGTATAGTGCTCAGTGGTTCAGGAGAACT182101AATGTTGTCAATGAATCCTCCTGATCCTGGAGGTGAGATAGTTGC
XM_070060743.1|LRRC3C;100356654|chr17:22457964:22475376:-|prespliced::chr17:22457964-22475376(-)
position: 5145-5159
TCTCCTTTATCTTTTACAAGTTTATAGTAA5145AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT
XM_070060744.1|LRRC3C;100356654|chr17:22457964:22475437:-|prespliced::chr17:22457964-22475437(-)
position: 5206-5220
TCTCCTTTATCTTTTACAAGTTTATAGTAA5206AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT
XM_051825651.2|LRRC3C;100356654|chr17:22457964:22475625:-|prespliced::chr17:22457964-22475625(-)
position: 5394-5408
TCTCCTTTATCTTTTACAAGTTTATAGTAA5394AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT
XM_017349189.3|LRRC3C;100356654|chr17:22457964:22475641:-|prespliced::chr17:22457964-22475641(-)
position: 5410-5424
TCTCCTTTATCTTTTACAAGTTTATAGTAA5410AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome-stg.dbcls.jp/mOryCun1.1_RefSeq_prespliced_d3g2603/TTCATTGACAACATT
lang : en | db : mOryCun1.1_RefSeq_prespliced_d3g2603 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.72:29037/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.020 | search_minus_done; http://172.18.8.72:29037/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=36
0.135 | 0.010 | cgi_end;

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