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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-06-15 14:37:02, GGGenome : Crab-eating macaque pre-spliced RNA, RefSeq on T2T-MFA8v1.1, D3G 26.03 (Mar, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

XM_015446088.3|HESX1;102125054|chr2:120286245:120315051:-|prespliced::chr2:120286245-120315051(-)
position: 26211-26225
ACTATGCTGCACTCCAAATACTATTGTGTT26211TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_065540823.1|HESX1;102125054|chr2:120286245:120315051:-|prespliced::chr2:120286245-120315051(-)
position: 26211-26225
ACTATGCTGCACTCCAAATACTATTGTGTT26211TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_065540824.1|HESX1;102125054|chr2:120286245:120315051:-|prespliced::chr2:120286245-120315051(-)
position: 26211-26225
ACTATGCTGCACTCCAAATACTATTGTGTT26211TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_005556359.5|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_045391898.3|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_045391901.3|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545705.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545706.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545707.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545708.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545709.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545710.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545711.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545712.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545713.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545714.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_065545715.2|TENM3;102125883|chr5:184838102:187588556:+|prespliced::chr5:184838102-187588556(+)
position: 1398054-1398068
TTTGGACCCCCAGATCAGTCTTCATATTCT1398054TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_074041032.1|F11;102143421|chr5:191022927:191039154:+|prespliced::chr5:191022927-191039154(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XR_012435369.1|F11;102143421|chr5:191022927:191049322:+|prespliced::chr5:191022927-191049322(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XR_012435371.1|F11;102143421|chr5:191022927:191049322:+|prespliced::chr5:191022927-191049322(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XR_012435373.1|F11;102143421|chr5:191022927:191049628:+|prespliced::chr5:191022927-191049628(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XR_012435370.1|F11;102143421|chr5:191022927:191050438:+|prespliced::chr5:191022927-191050438(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_005556483.5|F11;102143421|chr5:191022927:191050955:+|prespliced::chr5:191022927-191050955(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_005556484.5|F11;102143421|chr5:191022927:191050955:+|prespliced::chr5:191022927-191050955(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XR_012435372.1|F11;102143421|chr5:191022927:191050955:+|prespliced::chr5:191022927-191050955(+)
position: 12101-12115
GCCTGAGCCACCATGCCCAGCTTGCTATTC12101TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_074018621.1|COX10;102132338|chr16:14151292:14274349:+|prespliced::chr16:14151292-14274349(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_005582940.5|COX10;102132338|chr16:14151292:14274973:+|prespliced::chr16:14151292-14274973(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_074018620.1|COX10;102132338|chr16:14151292:14274973:+|prespliced::chr16:14151292-14274973(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_015437656.3|COX10;102132338|chr16:14151292:14291542:+|prespliced::chr16:14151292-14291542(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_065532794.1|COX10;102132338|chr16:14151292:14291542:+|prespliced::chr16:14151292-14291542(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_074018619.1|COX10;102132338|chr16:14151292:14291542:+|prespliced::chr16:14151292-14291542(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_074018622.1|COX10;102132338|chr16:14151292:14291542:+|prespliced::chr16:14151292-14291542(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XR_012425299.1|COX10;102132338|chr16:14151292:14291542:+|prespliced::chr16:14151292-14291542(+)
position: 27233-27247
GCCTCTGGGCCTATATTAGATGGGCCATGC27233TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_015430622.3|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430624.3|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430625.3|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015430626.3|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_045366611.2|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_074007469.1|SYT1;101865424|chr11:85717926:86317634:+|prespliced::chr11:85717926-86317634(+)
position: 251474-251488
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA251474AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_065535508.2|CYP2G2;102125069|chr19:48185480:48198941:-|prespliced::chr19:48185480-48198941(-)
position: 1787-1801
TTCCCTTAGGAGAGCTGTTAACATTATACT1787AATGTTGTCAATGAAAAGCTAAGATAGGCCAGCATGGTGGCTCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://172.18.8.233:20081/T2T-MFA8v1.1_RefSeq_prespliced_d3g2603/TTCATTGACAACATT
lang : en | db : T2T-MFA8v1.1_RefSeq_prespliced_d3g2603 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.72:29028/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.035 | search_minus_done; http://172.18.8.72:29028/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=17
0.137 | 0.006 | cgi_end;

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