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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-06-15 17:21:55, GGGenome : Rabbit spliced RNA, RefSeq on mOryCun1.1, D3G 26.03 (Mar, 2026)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

XM_002713403.5|HESX1;100008708|chr10:92700426:92703268:+|spliced::chr10:92700426-92703268(+)
position: 88-102
AGAATGCTACACTCCAAATACTATTGTGTT88TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC
XM_008257472.4|C1H9orf153;100342003|chr1:144313954:144355398:+|spliced::chr1:144313954-144355398(+)
position: 1426-1440
AGAAACACATTGGGAATCTTGGAAGTGGAA1426AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_008257487.4|C1H9orf153;100342003|chr1:144325237:144355398:+|spliced::chr1:144325237-144355398(+)
position: 4254-4268
AGAAACACATTGGGAATCTTGGAAGTGGAA4254AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847112.2|C1H9orf153;100342003|chr1:144325237:144355398:+|spliced::chr1:144325237-144355398(+)
position: 4315-4329
AGAAACACATTGGGAATCTTGGAAGTGGAA4315AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_008257491.4|C1H9orf153;100342003|chr1:144328257:144355398:+|spliced::chr1:144328257-144355398(+)
position: 2209-2223
AGAAACACATTGGGAATCTTGGAAGTGGAA2209AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847101.2|C1H9orf153;100342003|chr1:144328257:144355398:+|spliced::chr1:144328257-144355398(+)
position: 2270-2284
AGAAACACATTGGGAATCTTGGAAGTGGAA2270AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA
XM_051847092.2|C1H9orf153;100342003|chr1:144348787:144355398:+|spliced::chr1:144348787-144355398(+)
position: 1351-1365
AGAAACACATTGGGAATCTTGGAAGTGGAA1351AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://172.18.8.233:20081/mOryCun1.1_RefSeq_spliced_d3g2603/TTCATTGACAACATT
lang : en | db : mOryCun1.1_RefSeq_spliced_d3g2603 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.083 | 0.075 | search_plus_done; http://172.18.8.72:29038/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.72:29038/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.094 | 0.005 | cgi_end;

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